TREENAMER - Rename REFGEN IDs in your Tree Files

1. Tree File

The tree file must be in either a newick or nexus format.

2. Species List

This is the *.csv file generated by REFGEN.

1. Arabidopsis thaliana [NP_568811]
2. NP_568811
3. Arabidopsis thaliana

3a. Label Type
3b. Taxa Label Style

1. Arabidopsis thaliana
2. A.thaliana
3. At

4. Your Operating System
  1. Please Choose:

Select the system you expect to use the ouput on. This enables you to open the files correctly.

5. TREENAMER!

Click the button to rename the REFGEN IDs in your tree files.

Information / Sample Data / Help
  1. You can find the full instructions here.
  2. A sample tree file is available here and a REFGEN 'species file' is available here (save both files and select them in step 1 and 2 above). The results are avaible in the full instructions above.
  3. Citation: Leonard, G., et al. (2009). REFGEN and TREENAMER: Automated Sequence Data Handling for Phylogenetic Analysis in the Genomic Era. Evolutionary Bioinformatics Online, 5:1-4.Link PDF
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Guy Leonard MMX